List of functions

Data input

• Open files
• Extract sff file
• Join paired-end FASTQ

Sequence processing

• Quality filtering

• Sequence trimming

• Remove sequences containing ambiguous bases
• De-replicate and Re-replicate sequences
• Save sequences
• Save as local database
• Aligning sequences
• Denoising sequences from 454 pyrosequencing
• Clean chimeric sequences
• Extract Internal Transcribed Spacers (ITS)
• Clustering sequences
• Identify sequences by BLAST

Taxonomy assesment

• Get full taxonomy by acccession number
• Get full taxonomy by taxa name

Titles processing

• Replace, change or re-size titles
• Identical titles distinction
• Search sequences by titles

Sorting

• Sorting

Appearance

• Appearance

Info

• About SEED