Difference between revisions of "List of functions"
From SEED
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* '''[[Denoising sequnces from 454 pyrosequencing|Denoising sequnces from 454 pyrosequencing]] | * '''[[Denoising sequnces from 454 pyrosequencing|Denoising sequnces from 454 pyrosequencing]] | ||
* '''[[Clean chimeric sequences|Clean chimeric sequences]] | * '''[[Clean chimeric sequences|Clean chimeric sequences]] | ||
| − | * '''[[ | + | * '''[[Extract ITS|Extract Iinternal Transcribed Spacers (ITS)]] |
* '''[[Clustering sequences|Clustering sequences]] | * '''[[Clustering sequences|Clustering sequences]] | ||
* '''[[BLAST sequnces|BLAST sequnces]] | * '''[[BLAST sequnces|BLAST sequnces]] | ||
Revision as of 23:44, 19 March 2015
Data input
Sequence processing
- Remove sequences containing ambiguous bases
- De-replicate and Re-replicate sequences
- Save sequences
- Save as local database
- Aligning sequences
- Denoising sequnces from 454 pyrosequencing
- Clean chimeric sequences
- Extract Iinternal Transcribed Spacers (ITS)
- Clustering sequences
- BLAST sequnces
