Difference between revisions of "List of functions"
From SEED
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* '''[[Extract ITS|Extract Iinternal Transcribed Spacers (ITS)]] | * '''[[Extract ITS|Extract Iinternal Transcribed Spacers (ITS)]] | ||
* '''[[Clustering sequences|Clustering sequences]] | * '''[[Clustering sequences|Clustering sequences]] | ||
| − | * '''[[BLAST sequnces|BLAST | + | * '''[[BLAST sequnces|Indentify sequences by BLAST]] |
===Titles processing=== | ===Titles processing=== | ||
Revision as of 23:53, 19 March 2015
Data input
Sequence processing
- Remove sequences containing ambiguous bases
- De-replicate and Re-replicate sequences
- Save sequences
- Save as local database
- Aligning sequences
- Denoising sequnces from 454 pyrosequencing
- Clean chimeric sequences
- Extract Iinternal Transcribed Spacers (ITS)
- Clustering sequences
- Indentify sequences by BLAST
