Difference between revisions of "List of functions"
From SEED
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* '''[[Clustering sequences|Clustering sequences]] | * '''[[Clustering sequences|Clustering sequences]] | ||
* '''[[BLAST sequnces|Indentify sequences by BLAST]] | * '''[[BLAST sequnces|Indentify sequences by BLAST]] | ||
| + | |||
| + | ===Taxonomy assesment=== | ||
| + | * '''[[Taxonomy by accession form|Get full taxonomy by acccession number]] | ||
| + | * '''[[Taxonomy_by_name_form|Get full taxonomy by taxa name]] | ||
===Titles processing=== | ===Titles processing=== | ||
Revision as of 01:06, 20 March 2015
Contents
Data input
Sequence processing
- Remove sequences containing ambiguous bases
- De-replicate and Re-replicate sequences
- Save sequences
- Save as local database
- Aligning sequences
- Denoising sequnces from 454 pyrosequencing
- Clean chimeric sequences
- Extract Iinternal Transcribed Spacers (ITS)
- Clustering sequences
- Indentify sequences by BLAST
