Difference between revisions of "List of functions"
From SEED
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* '''[[Save as local database|Save as local database]] | * '''[[Save as local database|Save as local database]] | ||
* '''[[Aligning sequences|Aligning sequences]]''' | * '''[[Aligning sequences|Aligning sequences]]''' | ||
| − | * '''[[Denoising | + | * '''[[Denoising sequences from 454 pyrosequencing|Denoising sequences from 454 pyrosequencing]] |
* '''[[Clean chimeric sequences|Clean chimeric sequences]] | * '''[[Clean chimeric sequences|Clean chimeric sequences]] | ||
| − | * '''[[Extract ITS|Extract | + | * '''[[Extract ITS|Extract Internal Transcribed Spacers (ITS)]] |
* '''[[Clustering sequences|Clustering sequences]] | * '''[[Clustering sequences|Clustering sequences]] | ||
| − | * '''[[BLAST | + | * '''[[BLAST sequences|Identify sequences by BLAST]] |
===Taxonomy assesment=== | ===Taxonomy assesment=== | ||
Revision as of 15:18, 23 April 2015
Contents
Data input
Sequence processing
- Remove sequences containing ambiguous bases
- De-replicate and Re-replicate sequences
- Save sequences
- Save as local database
- Aligning sequences
- Denoising sequences from 454 pyrosequencing
- Clean chimeric sequences
- Extract Internal Transcribed Spacers (ITS)
- Clustering sequences
- Identify sequences by BLAST
