List of functions

Data input

• Open files
• Extract sff file
• Join paired-end FASTQ

Sequence processing

• Quality filtering

• Sequence trimming

• Remove sequences containing ambiguous bases
• De-replicate and Re-replicate sequences
• Save sequences
• Save as local database
• Aligning sequences
• Denoising sequnces from 454 pyrosequencing
• Clean chimeric sequences
• Fungal ITS extraction
• Clustering sequences
• BLAST sequnces

Titles processing

• Replace, change or resize titles
• Identical titles distinction
• Search sequences by titles

Sorting

• Sorting

Appearance

• Appearance

Info

• About SEED