Difference between revisions of "Main Page"
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| − | SEED is a simple sequence editor and pipeline for processing of nucleotide sequences in the [//en.wikipedia.org/wiki/FASTA_format FASTA | + | SEED is a simple sequence editor and pipeline for processing of nucleotide sequences in the [//en.wikipedia.org/wiki/FASTA_format FASTA] and [//en.wikipedia.org/wiki/FASTQ_format FASTQ format]. SEED allows simple grouping of sequences based on the search for sequence motifs (e.g. primers, pyrosequencing tags) and a batch processing of the resulting groups. It also supports the connections to external tools for sequence processing and analysis like Mafft, Mothur, Uclust, Usearch, ITSx or Blast and can be used for further processing, visualization, management and analysis of their results. The SEED is especially designed to provide the environment for a sequential analysis of the sequences of PCR amplicons obtained by 454-pyrosequencing or Illumina. |
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Revision as of 17:12, 9 March 2015
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SEED is a simple sequence editor and pipeline for processing of nucleotide sequences in the FASTA and FASTQ format. SEED allows simple grouping of sequences based on the search for sequence motifs (e.g. primers, pyrosequencing tags) and a batch processing of the resulting groups. It also supports the connections to external tools for sequence processing and analysis like Mafft, Mothur, Uclust, Usearch, ITSx or Blast and can be used for further processing, visualization, management and analysis of their results. The SEED is especially designed to provide the environment for a sequential analysis of the sequences of PCR amplicons obtained by 454-pyrosequencing or Illumina.
Consult the User's Guide for information on using the wiki software.
