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X-ORIGINAL-URL:https://www.biomed.cas.cz
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BEGIN:VEVENT
DTSTART;TZID=Europe/Prague:20241127T080000
DTEND;TZID=Europe/Prague:20241129T170000
DTSTAMP:20260429T100226
CREATED:20240917T090109Z
LAST-MODIFIED:20241014T102557Z
UID:2148-1732694400-1732899600@www.biomed.cas.cz
SUMMARY:IEM CAS Introduction to Programming for Image Processing 2024
DESCRIPTION:Due to reaching capacity for in-person participation\, registration is now only available for online attendance. Thank you for your understanding.  \nBasic information\nThe course is tailored to users already familiar with the basics of image processing. It will be focused on automatization\, high throughput and basic scripting. Course participants will learn how to create and edit macros in ImageJ and how to write more sophisticated scripts for batch processing. Furthermore\, they will learn the basics of image processing in Matlab and Cellpose. \nDuration: 3 days \nLanguage: English \nProgramme\nLocation: Turquoise Auditorium \nSpeakers: Barbora Hyklová\, Štěpán Kortus\, Iva Švecová\, Jakub Zahumenský \nDay 1 / Wednesday / 27. 11. 2024\n\nIntroduction\, macro recording and editing in ImageJ\nWriting a complex macro for batch processing – automatic data import\, cell segmentation\, measurements\, export in organized format\n\nDay 2 / Thursday / 28. 11. 2024\n\nScript automation\, ImageJ customization\nCell segmentation using Cellpose and integration of Cellpose into the workflow\nDemonstration of a complex ImageJ/Cellpose workflow\n\nDay 3 / Friday / 29.11. 2024\n\nOptional: Discussion of individual projects and data analysis questions. \n\nRequirements\nPrior Experience with ImageJ: Participants should have a basic familiarity with ImageJ and its fundamental features. They should be comfortable with tasks like image import\, basic processing (e.g.\, brightness/contrast adjustments)\, and measurements.  \nOwn laptop: Participants are required to bring their own laptop for hands-on exercises. If you do not have access to a laptop\, please inform us in advance\, and we will provide you with one. Prior to the event\, you will receive a list of required software programs to install for the course. \n\n\n\n\n\n\n\n\n\n\nRegistration\nRegistration here: free of charge \n  \n\n\n 
URL:https://www.biomed.cas.cz/event/introduction-to-programming-for-image-processing-2024-preliminary-date/
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Prague:20241127T150000
DTEND;TZID=Europe/Prague:20241127T160000
DTSTAMP:20260429T100226
CREATED:20241118T123730Z
LAST-MODIFIED:20241118T123730Z
UID:2260-1732719600-1732723200@www.biomed.cas.cz
SUMMARY:Seminář Michaela Procházková\, M.Sc.
DESCRIPTION:“CRL4COP1 ubiquitination complex as a balancer of early odontogenesis” \nCullin-RING ubiquitin ligase (CRL) complexes have been heavily studied in connection to cancer progression but there is limited evidence about their physiological roles. One of the exceptions is disruption of limb development by thalidomide induced by inhibition of CRL4 complex via regulation of Fgf8 (Ito et al.\, 2010). Notably\, Fgf8 expressing population is essential also for development of tooth primordia and we found CRL4 genes to be specifically expressed within odontognic epithelium. We further identified COP1 as a substrate binding protein which can bind ETS transcription factors\, downstream targets of Fgf pathway\, and unveiled that conditional deletion of CRL4 genes severly affects size and morphology of molar primordia and future teeth.
URL:https://www.biomed.cas.cz/event/seminar-michaela-prochazkova-m-sc/
LOCATION:Posluchárna Milana Haška / Milan Hašek Auditorium
ORGANIZER;CN="%C3%9AMG":MAILTO:leona.krausova@img.cas.cz
END:VEVENT
BEGIN:VEVENT
DTSTART;VALUE=DATE:20241203
DTEND;VALUE=DATE:20241206
DTSTAMP:20260429T100226
CREATED:20241101T112749Z
LAST-MODIFIED:20241101T112841Z
UID:2242-1733184000-1733443199@www.biomed.cas.cz
SUMMARY:Live Cell Imaging Course 2024
DESCRIPTION:The course is very practically-oriented\, theoretical lectures are followed by 6 hours of hands-on session every day in small groups. You will learn widefield\, confocal\, and advanced methods including super-resolution\, photomanipulation\, and FLIM. You will have a chance to work on high-end microscopes and compare wide variety of approaches and instrumentation. \nFor detailed program and overview of taught methods and microscopes please check course webpage: https://course.img.cas.cz/lci/ \nLooking forward to seeing you! \nJan Valečka and Helena Chmelová
URL:https://www.biomed.cas.cz/event/live-cell-imaging-course-2024/
LOCATION:IMG
ORGANIZER;CN="%C3%9AMG":MAILTO:leona.krausova@img.cas.cz
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Prague:20241204T150000
DTEND;TZID=Europe/Prague:20241204T160000
DTSTAMP:20260429T100226
CREATED:20241126T132009Z
LAST-MODIFIED:20241126T132009Z
UID:2263-1733324400-1733328000@www.biomed.cas.cz
SUMMARY:Seminář Marie Zelená\, M.Sc.
DESCRIPTION:“Every stick has two ends – Using high resolution imaging to characterize both ends of the eukaryotic flagellum” \nThe eukaryotic flagellum is important for cell motility. The microtubule-based axoneme generating the flagellar beating has been extensively studied. However\, additional structures are associated with the proximal and distal end of the flagellum\, with their composition and processes of their formation being poorly understood. \nTo gain an insigth into these structures we have studied them in the protozoan parasite Trypanosoma brucei\, which is experimentally highly tractable. First\, we focused on the flagellar pocket around the proximal end of the flagellum\, which is the exclusive site for endocytosis and exocytosis of the parasite. Using expansion microscopy we were able to define discrete stages of the flagellar pocket division and formation of the flagellar pocket collar\, which seals the pocket. Second\, we took advantage of our knowledge of the flagellum distal-end proteome and combined it with expansion microscopy and cryo-electron tomography to characterize the enigmatic microtubule plugs at the distal end of the flagellum. \nOur work elucidates aspects of the flagellar biology of an important parasite. Moreover\, given the conserved nature of the organelle\, our results have also implications for flagella across eukaryotes.
URL:https://www.biomed.cas.cz/event/seminar-marie-zelena-m-sc/
LOCATION:Posluchárna Milana Haška / Milan Hašek Auditorium
ORGANIZER;CN="%C3%9AMG":MAILTO:leona.krausova@img.cas.cz
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Prague:20241209T150000
DTEND;TZID=Europe/Prague:20241209T163000
DTSTAMP:20260429T100226
CREATED:20241021T123023Z
LAST-MODIFIED:20241021T123023Z
UID:2217-1733756400-1733761800@www.biomed.cas.cz
SUMMARY:19th BioCEV-Krč Methodological Seminar
DESCRIPTION:
URL:https://www.biomed.cas.cz/event/19th-biocev-krc-methodological-seminar/
LOCATION:Kinosal\, Vídeňská 1083\, Praha
END:VEVENT
BEGIN:VEVENT
DTSTART;VALUE=DATE:20241210
DTEND;VALUE=DATE:20241212
DTSTAMP:20260429T100226
CREATED:20241107T124538Z
LAST-MODIFIED:20241107T124639Z
UID:2251-1733788800-1733961599@www.biomed.cas.cz
SUMMARY:IDP – Image Data Presentation
DESCRIPTION:The human eye is our primary tool for interpreting images\, so scientific images should be adjusted with this perception in mind. However\, display and print transfer characteristics often degrade images\, making them differ from reality. This course offers a unique approach\, focusing on preparing image data for presentation. \nWe’ll cover essential topics like gamma correction and print preparation to ensure your posters and figures appear as true-to-life as possible. \nDay 1: Lectures with scientific colleagues and the opportunity to consult with top experts in advanced graphic displays (Antonin Charvat\, EIZO) and professional photo preparation for print (Karel Pones\, ITF). \nDay 2: Hands-on practice with image processing software and figure-making techniques (Adobe CS and freeware alternatives). \nYou’re welcome to attend the lectures without registration\, but registration is required for the practical sessions. \nWe look forward to seeing you! \nThe Organizing Team \n Oldrich Benada\, MBU & Ivan Novotny\, IMG
URL:https://www.biomed.cas.cz/event/idp-image-data-presentation/
LOCATION:IMG
ORGANIZER;CN="%C3%9AMG":MAILTO:leona.krausova@img.cas.cz
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Prague:20241211T080000
DTEND;TZID=Europe/Prague:20241211T170000
DTSTAMP:20260429T100226
CREATED:20241126T132105Z
LAST-MODIFIED:20241126T132105Z
UID:2265-1733904000-1733936400@www.biomed.cas.cz
SUMMARY:Seminář Nenad Radivojević\, M.Sc.
DESCRIPTION:“Quality control in snRNP biogenesis” \nBefore being assembled into spliceosomes\, small nuclear ribonucleoprotein particles (snRNPs) undergo a complex and regulated maturation pathway. Cajal bodies (CBs) have been shown to monitor the final stage of this process by sequestering immature or misassembled particles through a yet unknown quality control mechanism. Here\, we have identified coilin\, a CB marker protein\, as the quality control factor. We further characterize coilin domains interacting with snRNPs and elucidate the molecular mechanism how coilin recognize immature snRNPs. \n 
URL:https://www.biomed.cas.cz/event/seminar-nenad-radivojevic-m-sc/
LOCATION:Posluchárna Milana Haška / Milan Hašek Auditorium
ORGANIZER;CN="%C3%9AMG":MAILTO:leona.krausova@img.cas.cz
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Prague:20241217T100000
DTEND;TZID=Europe/Prague:20241217T110000
DTSTAMP:20260429T100226
CREATED:20241205T094751Z
LAST-MODIFIED:20241205T094751Z
UID:2273-1734429600-1734433200@www.biomed.cas.cz
SUMMARY:Lecture „Unlocking the secrets of the heart – toward an understanding of molecular sex differences in cardiac health and disease“
DESCRIPTION:Lukáš Chmátal\, Ph.D.\, Whitehead Institute for Biomedical Research\, MIT\, USA \nHeart disease is the leading cause of death worldwide\, but its effects are far from uniform. Men and women experience striking differences in symptoms\, prevalence\, and outcomes – yet the molecular mechanisms underlying these differences remain poorly understood. In this lecture\, I will reveal how male and female hearts fundamentally differ in their energy metabolism\, which is driven by mitochondria\, the cell’s powerhouse. I will also outline innovative experimental approaches to uncover the role of sex chromosomes in regulating these differences – insights that will shape the research agenda of my own laboratory. Please\, join me to explore how understanding these mechanisms could transform the way we approach cardiac health for both sexes. \nMore: https://fgu.cas.cz/udalost/lukas-chmatal-ph-d/
URL:https://www.biomed.cas.cz/event/lecture-unlocking-the-secrets-of-the-heart-toward-an-understanding-of-molecular-sex-differences-in-cardiac-health-and-disease/
LOCATION:Kinosal\, Vídeňská 1083\, Praha
ORGANIZER;CN="FGU":MAILTO:Olga.Zimmermannova@fgu.cas.cz
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Prague:20241218T150000
DTEND;TZID=Europe/Prague:20241218T160000
DTSTAMP:20260429T100226
CREATED:20241204T070320Z
LAST-MODIFIED:20241204T070320Z
UID:2270-1734534000-1734537600@www.biomed.cas.cz
SUMMARY:Seminář Karolina Kowalska\, M.Sc.
DESCRIPTION:“Structural basis of MICAL autoinhibition and activation” \nIn this talk\, we will explore the role of MICAL proteins in cellular dynamics\, focusing on their ability to disassemble actin filaments and their implications for processes like axon guidance\, cytokinesis\, and cell morphology. We will present our recent findings based on the cryoEM structure of human MICAL1\, which reveal the molecular mechanisms underlying MICAL1 autoinhibition. Specifically\, we will discuss how an intramolecular interaction between the N-terminal catalytic and C-terminal coiled-coil domains blocks F-actin interaction\, and how structural changes and domain interactions mediate activation. These findings highlight evolutionarily conserved mechanisms within the MICAL family\, shedding light on their broader functional relevance.
URL:https://www.biomed.cas.cz/event/seminar-karolina-kowalska-m-sc/
LOCATION:Posluchárna Milana Haška / Milan Hašek Auditorium
ORGANIZER;CN="%C3%9AMG":MAILTO:leona.krausova@img.cas.cz
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Prague:20250108T150000
DTEND;TZID=Europe/Prague:20250108T160000
DTSTAMP:20260429T100226
CREATED:20241128T122535Z
LAST-MODIFIED:20241128T122535Z
UID:2267-1736348400-1736352000@www.biomed.cas.cz
SUMMARY:Seminář Dr. Nicolas Rivron
DESCRIPTION:Modeling human early pregnancy with stem cells” \nThe blastocyst is the early mammalian organism before implantation in the uterus. We have promoted the self-organization of stem cells into models of mouse and human blastocysts\, which we have named blastoids (Nature 2018\, Nature 2021). Blastoids are morphologically and transcriptionally similar to the blastocyst and contain analogs of all three cell types that would eventually develop into the complete organism (embryonic and extraembryonic). Because blastoids are complete and model the preimplantation stage\, they can be introduced into the uterus (mouse model) or combined in vitro with uterine cells (human model) to recapitulate aspects of the normally hidden implantation processes. Unlike blastocysts\, blastoids come in large numbers and facilitate a more systematic modulation and analysis of development. As such\, they represent both a scientific and ethical alternative to the use of embryos for research. Using this approach\, we are investigating the genome evolution underlying species-specific aspects of blastocyst development and implantation\, with the long-term goal of understanding the evolutionary basis of human pregnancy characteristics (50% of fertilized eggs never develop). This knowledge could help solve the global health problems of family planning\, fertility decline and prenatal preventive medicine.
URL:https://www.biomed.cas.cz/event/seminar-dr-nicolas-rivron/
LOCATION:Posluchárna Milana Haška / Milan Hašek Auditorium
ORGANIZER;CN="%C3%9AMG":MAILTO:leona.krausova@img.cas.cz
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Prague:20250115T150000
DTEND;TZID=Europe/Prague:20250115T160000
DTSTAMP:20260429T100226
CREATED:20250106T090313Z
LAST-MODIFIED:20250106T090313Z
UID:2276-1736953200-1736956800@www.biomed.cas.cz
SUMMARY:Seminář Karolína Vaníčková\, M.Sc.
DESCRIPTION:“Infections and hematopoietic stem cells: how do they communicate?” \nInfections are primarily cleared by immune cells in our bodies. However\, we observed that the most immature hematopoietic stem cells also contribute to this process. In this lecture\, we will report on the mechanisms that activate an hematopoietic stem cell during infection and the cellular adaptations that these cells undertake. Special attention will be given to the contribution of the Wnt/beta-catenin signaling pathway.
URL:https://www.biomed.cas.cz/event/seminar-karolina-vanickova-m-sc/
LOCATION:Posluchárna Milana Haška / Milan Hašek Auditorium
ORGANIZER;CN="%C3%9AMG":MAILTO:leona.krausova@img.cas.cz
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Prague:20250120T150000
DTEND;TZID=Europe/Prague:20250120T160000
DTSTAMP:20260429T100226
CREATED:20250113T092008Z
LAST-MODIFIED:20250113T092128Z
UID:2279-1737385200-1737388800@www.biomed.cas.cz
SUMMARY:Lecture “Iron and bone: a (not so) unusual liaison? Unraveling the role of cell metabolism in osteoblasts during iron overload”
DESCRIPTION:Speaker: Martina Rauner\, Technische Universität Dresden\, Germany
URL:https://www.biomed.cas.cz/event/lecture-iron-and-bone-a-not-so-unusual-liaison-unraveling-the-role-of-cell-metabolism-in-osteoblasts-during-iron-overload/
LOCATION:Kinosal\, Vídeňská 1083\, Praha
ORGANIZER;CN="FGU":MAILTO:Olga.Zimmermannova@fgu.cas.cz
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Prague:20250122T150000
DTEND;TZID=Europe/Prague:20250122T160000
DTSTAMP:20260429T100226
CREATED:20250113T124228Z
LAST-MODIFIED:20250113T124228Z
UID:2282-1737558000-1737561600@www.biomed.cas.cz
SUMMARY:Seminář Michal Mrkáček\, M.Sc.
DESCRIPTION:“Tipping the Lipid Scales: Negative Feedback Regulation via ORMDLs Protein Degradation Ensures Sphingolipid Homeostasis” \nSphingolipids are essential lipid molecules that contribute to cellular structure and signaling. Their de novo synthesis is initiated in the endoplasmic reticulum (ER) and catalyzed by the multimeric serine palmitoyltransferase (SPT) complex. The ER-resident ORMDL proteins are well-established regulators of sphingolipid synthesis\, directly inhibiting the SPT complex to control the pathway at its origin. Here\, we identify a negative feedback loop that fine-tunes this regulatory mechanism. Using pharmacological inhibitors such as myriocin and fumonisin B1\, which target different steps of the sphingolipid pathway\, we demonstrate that reduced sphingolipid levels promote enhanced degradation of ORMDL proteins. This degradation alleviates SPT inhibition\, thereby accelerating de novo sphingolipid biosynthesis and restoring metabolic balance.
URL:https://www.biomed.cas.cz/event/seminar-michal-mrkacek-m-sc/
LOCATION:Posluchárna Milana Haška / Milan Hašek Auditorium
ORGANIZER;CN="%C3%9AMG":MAILTO:leona.krausova@img.cas.cz
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Prague:20250129T150000
DTEND;TZID=Europe/Prague:20250129T160000
DTSTAMP:20260429T100226
CREATED:20250114T125756Z
LAST-MODIFIED:20250114T125756Z
UID:2284-1738162800-1738166400@www.biomed.cas.cz
SUMMARY:Seminář Mgr. et Mgr. Evžen Bouřa\, Ph.D.
DESCRIPTION:“RNA cap methylation in poxviruses and coronavirus – differences and similarities” \nRNA methyltransferases (MTases) are responsible for synthesizing the 5′ RNA cap\, which plays a crucial role in RNA stability and efficient translation. Over the past two years\, both our research team and others have developed numerous inhibitors targeting coronaviral MTases. Through our efforts\, we have successfully determined the crystal structures of these inhibitors bound to the coronaviral nsp14 and nsp16/nsp10 MTases. Additionally\, we recently elucidated the crystal structure of the monkeypox virus MTase VP39\, in complex with the broad-spectrum MTase inhibitor sinefungin and several other inhibitors. These structural studies have unveiled notable distinctions between coronaviral and poxviral MTases\, while also highlighting the potential for targeting these enzymes with the same or closely related compounds.
URL:https://www.biomed.cas.cz/event/seminar-mgr-et-mgr-evzen-boura-ph-d/
LOCATION:Posluchárna Milana Haška / Milan Hašek Auditorium
ORGANIZER;CN="%C3%9AMG":MAILTO:leona.krausova@img.cas.cz
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Prague:20250205T150000
DTEND;TZID=Europe/Prague:20250205T160000
DTSTAMP:20260429T100226
CREATED:20250122T070222Z
LAST-MODIFIED:20250122T070222Z
UID:2292-1738767600-1738771200@www.biomed.cas.cz
SUMMARY:Seminář Lenka Ungrová\, M.Sc.
DESCRIPTION:“Birds do it their way: avian interferon regulatory factors (almost) resolved” \nInterferon regulatory factors (IRFs) are transcription factors that play a key role in vertebrate innate antiviral immunity. IRF3 and IRF7 activate the expression of IFN-β\, which in response induces the assembly of STAT1\, STAT2 and IRF9 into the ISGF3 complex. Subsequently\, this complex activates the expression of interferon-stimulated genes (ISGs) mounting the antiviral state of the cell. Interestingly\, IRF9 and IRF3 have been reported to be missing in birds. As part of our efforts to search for hidden genes in avian genomes\, we have identified IRF3 in paleognathous birds and IRF9 in most bird orders with the notable exception of the chicken. We focus on the experimental characterization of IRF9 in a duck cell line and also look for a possible substitute for IRF9 in chickens.
URL:https://www.biomed.cas.cz/event/seminar-lenka-ungrova-m-sc/
LOCATION:Posluchárna Milana Haška / Milan Hašek Auditorium
ORGANIZER;CN="%C3%9AMG":MAILTO:leona.krausova@img.cas.cz
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Prague:20250206T140000
DTEND;TZID=Europe/Prague:20250206T150000
DTSTAMP:20260429T100226
CREATED:20250204T105313Z
LAST-MODIFIED:20250204T105353Z
UID:2299-1738850400-1738854000@www.biomed.cas.cz
SUMMARY:Seminář - Prof. Cheng Zhu - "Mechanotransduction through immunoreceptors"
DESCRIPTION:Dear colleagues\, \nI am delighted to invite you to a seminar by Prof. Cheng Zhu (Georgia Institute of Technology\, USA) at the Institute of Molecular Genetics on February 6 at 14:00 (Hasek Lecture Hall). Prof. Zhu is a recognized leader and pioneer at the interface of immunology\, structural biology\, and mechanosensing with groundbreaking contributions that have advanced our understanding of how immune receptors work at the cell-cell contacts. \nInvitation: https://www.img.cas.cz/files/2025/01/20250206_Cheng_Zhu.pdf \nPublication profile: https://scholar.google.com/citations?user=_tPv2wEAAAAJ&hl=en&oi=ao \nWith best regards\, \nOndrej Stepanek
URL:https://www.biomed.cas.cz/event/seminar-mechanotransduction-through-immunoreceptors/
LOCATION:Posluchárna Milana Haška / Milan Hašek Auditorium
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Prague:20250211T090000
DTEND;TZID=Europe/Prague:20250211T120000
DTSTAMP:20260429T100226
CREATED:20250116T105835Z
LAST-MODIFIED:20250116T105835Z
UID:2286-1739264400-1739275200@www.biomed.cas.cz
SUMMARY:Školení Genderová dimenze v obsahu výzkumu
DESCRIPTION:Seminář povedou Eva Oliva a Gabriela Langhammerová z NKC – gender a věda. \nNa semináři se dozvíte:\n– jaké jsou požadavky evropských i domácích grantových agentur\n– co je genderová dimenze a proč je důležité ji zohlednit\n– jaká je souvislost s ins􀀃tucionální změnou a plány genderové rovnos􀀃\n– v čem spočívají koncepty intersekcionality a inkluzivity\n– a jak vše začlenit do obsahu výzkumu
URL:https://www.biomed.cas.cz/event/skoleni-genderova-dimenze-v-obsahu-vyzkumu/
LOCATION:Posluchárna Milana Haška / Milan Hašek Auditorium
ORGANIZER;CN="%C3%9AMG":MAILTO:leona.krausova@img.cas.cz
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Prague:20250212T150000
DTEND;TZID=Europe/Prague:20250212T160000
DTSTAMP:20260429T100226
CREATED:20250203T151725Z
LAST-MODIFIED:20250203T151725Z
UID:2294-1739372400-1739376000@www.biomed.cas.cz
SUMMARY:Seminář Ludovica Antiga\, M.Sc.
DESCRIPTION:“PIP2-RNA-protein interactions in phase separation of Pol II transcription” \nThe RNA Polymerase II transcription is a multifaceted process crucial for gene expression in eukaryotic cells. Over the last decade\, liquid-liquid phase separation (LLPS) was shown to be crucial in regulation of RNA pol II transcription. We have shown that nuclear phosphoinositides are pivotal for regulating biological processes and PIP2 has been shown to localize with RNA Pol II machinery and nascent RNA\, linking it to the initiation step of transcription. Here\, by using lipid-interacting RNA sequencing (LIPRNAseq) and confocal microscopy\, we found a PIP2-binding AU-rich RNA motif and identified the long non-coding RNA HANR (lncHANR) in complex with PIP2 as a part of oncogenic super-enhancers in perinucleolar region of the nucleus.Furthermore\, we used PIP2-pull down coupled with mass spectrometry to identify RNA-dependent PIP2 interactome associated with nuclear processes emphasizing the role of PIP2 in liquid-liquid phase separation of RNA Pol II transcription machinery. \n 
URL:https://www.biomed.cas.cz/event/seminar-ludovica-antiga-m-sc/
LOCATION:Posluchárna Milana Haška / Milan Hašek Auditorium
ORGANIZER;CN="%C3%9AMG":MAILTO:leona.krausova@img.cas.cz
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Prague:20250217T150000
DTEND;TZID=Europe/Prague:20250217T160000
DTSTAMP:20260429T100226
CREATED:20250207T135500Z
LAST-MODIFIED:20250207T135500Z
UID:2306-1739804400-1739808000@www.biomed.cas.cz
SUMMARY:Lecture „Sleep\, synuclein and microbiome“
DESCRIPTION:
URL:https://www.biomed.cas.cz/event/lecture-sleep-synuclein-and-microbiome/
LOCATION:Kinosal\, Vídeňská 1083\, Praha
ORGANIZER;CN="FGU":MAILTO:Olga.Zimmermannova@fgu.cas.cz
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Prague:20250219T150000
DTEND;TZID=Europe/Prague:20250219T160000
DTSTAMP:20260429T100226
CREATED:20250210T070500Z
LAST-MODIFIED:20250218T081223Z
UID:2308-1739977200-1739980800@www.biomed.cas.cz
SUMMARY:Seminář Jana Smolíková\, Ph.D. - ZRUŠENO
DESCRIPTION:“Analysis of a novel chicken Pax6 mutant” \nPax6 is known as the „master control gene“ for eye formation\, playing a crucial role in the development of the lens\, retina\, and other ocular structures. It drives the formation of the eye field\, initiates lens differentiation\, and helps establish the retina—all vital for vision. \nWhile the role of Pax6 in eye development is well-studied in other species\, there has been little research on Pax6 in chickens specifically. This gap in knowledge presents an exciting opportunity to understand how the mutation of Pax6 impacts eye formation in birds. \nIn this seminar we’ll explore the role of the Pax6 transcription factor in chicken eye development and this could provide valuable insights into vertebrate eye development.
URL:https://www.biomed.cas.cz/event/seminar-jana-smolikova-ph-d/
LOCATION:Posluchárna Milana Haška / Milan Hašek Auditorium
ORGANIZER;CN="%C3%9AMG":MAILTO:leona.krausova@img.cas.cz
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Prague:20250226T150000
DTEND;TZID=Europe/Prague:20250226T160000
DTSTAMP:20260429T100226
CREATED:20250218T115219Z
LAST-MODIFIED:20250218T115219Z
UID:2312-1740582000-1740585600@www.biomed.cas.cz
SUMMARY:Seminář Iris Durić
DESCRIPTION:“Transmembrane adaptor protein WBP1L: searching for its binding partners to understand its role in hematopoiesis” \nTransmembrane adaptor protein WBP1L\, also known as Outcome Predictor of Acute Leukemia 1 (OPAL1) was identified nearly 20 years ago as a positive prognostic marker in childhood acute lymphoblastic leukemia. More recently\, elevated WBP1L expression has also been linked to positive outcomes in ovarian cancer. Despite these clinical associations\, the physiological function of WBP1L has long remained unclear. Recently we demonstrated its involvement in the regulation of hematopoiesis\, hematopoietic stem cell functionality and hematopoietic stem cell performance during transplantation. As an adaptor protein\, WBP1L’s activity depends on its interacting partners. This presentation will describe our efforts to identify these proteins and understand their contributions to WBP1L function\, focusing on two novel interactions: one with the receptor for interferon gamma and the other with the SCFβ-TRCP1 ubiquitin ligase complex.
URL:https://www.biomed.cas.cz/event/seminar-iris-duric/
LOCATION:Posluchárna Milana Haška / Milan Hašek Auditorium
ORGANIZER;CN="%C3%9AMG":MAILTO:leona.krausova@img.cas.cz
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Prague:20250305T150000
DTEND;TZID=Europe/Prague:20250305T160000
DTSTAMP:20260429T100226
CREATED:20250205T094137Z
LAST-MODIFIED:20250205T094137Z
UID:2302-1741186800-1741190400@www.biomed.cas.cz
SUMMARY:Seminář Andrea Pauli
DESCRIPTION:“Fundamental principles during the egg-to-embryo transition” \nFertilization initiates the egg-to-embryo transition\, one of the most dramatic developmental transition resulting in the transformation of the egg from a dormant state into regulatorily and functionally distinct embryonic cells. While this transition has been studied extensively in respect to zygotic genome activation\, the molecular mechanisms that mediate sperm-egg binding and fusion during fertilization and regulate the maintenance of dormancy in the egg and re-activation in the embryo remain poorly understood. The vision of the Pauli lab is to gain mechanistic insights into the egg-to-embryo transition\, with a specific focus on the molecular control of fertilization and developmentally programmed dormancy and re-activation. \nAndrea (Andi) Pauli will talk about recent findings from her lab related to their work towards uncovering the mechanism of vertebrate fertilization and translational regulation during the egg-to-embryo transition. By combining genetic\, molecular\, cellular\, biochemical\, structural and genomics approaches in their main model organism\, the zebrafish\, the long-term vision of the Pauli lab is to unravel new concepts and molecular mechanisms governing this fascinating developmental transition that marks the beginning of life.
URL:https://www.biomed.cas.cz/event/seminar-andrea-pauli/
LOCATION:Posluchárna Milana Haška / Milan Hašek Auditorium
ORGANIZER;CN="%C3%9AMG":MAILTO:leona.krausova@img.cas.cz
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Prague:20250312T150000
DTEND;TZID=Europe/Prague:20250312T160000
DTSTAMP:20260429T100226
CREATED:20250303T145647Z
LAST-MODIFIED:20250303T145647Z
UID:2315-1741791600-1741795200@www.biomed.cas.cz
SUMMARY:Seminář Jakub Onhajzer\, M.Sc.
DESCRIPTION:“Reactivation of oncofetal genes reveals cellular heterogeneity and zonation in intestinal tumors” \nColorectal cancer is one of the most common malignancies. Recent studies have shown that tumor cells can reactivate so-called oncofetal genes — genes normally expressed during embryonic development but silenced in healthy adult intestinal tissue. These include Trop2 and Sca1\, both of which are reactivated during the development and progression of intestinal tumors. Using a mouse model\, we investigated the timing and molecular mechanisms driving the reactivation of these genes during the transformation of intestinal epithelial cells into tumor cells. By combining flow cytometry\, 3D microscopy\, and transcriptional profiling\, we demonstrate that the re-expression of oncofetal genes is not uniform. Instead\, it creates spatial heterogeneity — a phenomenon known as tumor zonation. This zonation is associated with the activation of fetal gene programs and the acquisition of stem cell-like properties. We also show that Sca1– and/or Trop2-positive tumor cells activate distinct molecular pathways and display unique biological properties. As several oncofetal genes (antigens) are already being explored as potential therapeutic targets\, understanding the mechanisms underlying their reactivation could contribute to the development of new targeted therapies for colorectal cancer.
URL:https://www.biomed.cas.cz/event/seminar-jakub-onhajzer-m-sc/
LOCATION:Posluchárna Milana Haška / Milan Hašek Auditorium
ORGANIZER;CN="%C3%9AMG":MAILTO:leona.krausova@img.cas.cz
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Prague:20250319T150000
DTEND;TZID=Europe/Prague:20250319T160000
DTSTAMP:20260429T100226
CREATED:20250310T081141Z
LAST-MODIFIED:20250310T081141Z
UID:2326-1742396400-1742400000@www.biomed.cas.cz
SUMMARY:Seminář Jakub Sumbal
DESCRIPTION:“Probing the functional heterogeneity and hierarchy in mammary gland fibroblasts” \nIn this talk\, I will focus on the heterogeneity and hierarchy of mouse mammary fibroblasts – the predominant cell type of mammary stroma. By single cell RNA sequencing\, genetic lineage tracing and microscopy we show that fibroblast transcriptomic clusters represent spatially differentiated populations with specific functions. Moreover\, we used the lineage tracing to show differentiation traits within fibroblast populations and other stromal cell types. Finally\, I will discuss how the regulation of fibroblast differentiation may be important for proper organ morphogenesis and cancer progression.
URL:https://www.biomed.cas.cz/event/seminar-jakub-sumbal/
LOCATION:Posluchárna Milana Haška / Milan Hašek Auditorium
ORGANIZER;CN="%C3%9AMG":MAILTO:leona.krausova@img.cas.cz
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Prague:20250324T140000
DTEND;TZID=Europe/Prague:20250324T150000
DTSTAMP:20260429T100226
CREATED:20250305T115621Z
LAST-MODIFIED:20250305T115621Z
UID:2317-1742824800-1742828400@www.biomed.cas.cz
SUMMARY:Přednáška pro nevědce a nevědkyně - V. Hořejší
DESCRIPTION:Poučení z covidové epidemie – co dělat příště jinak \nCovidová krize v letech 2020-2022 výrazně zasáhla do životů nás všech. Co se udělalo dobře a co naopak špatně? Jak obstáli občané\, politici\, vědci a zdravotníci? Jak je možné\, že se americkým ministrem zdravotnictví stává výrazný antivaxer a šiřitel „fejků“? Pochází covidový virus z přírody nebo z laboratoře? Pomohou nám získané zkušenosti při příští epidemii\, která jistě někdy přijde? \nZajímavých otázek je mnoho… \n 
URL:https://www.biomed.cas.cz/event/prednaska-pro-nevedce-a-nevedkyne-v-horejsi/
LOCATION:Posluchárna Milana Haška / Milan Hašek Auditorium
ORGANIZER;CN="%C3%9AMG":MAILTO:leona.krausova@img.cas.cz
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Prague:20250324T150000
DTEND;TZID=Europe/Prague:20250324T160000
DTSTAMP:20260429T100226
CREATED:20250319T135232Z
LAST-MODIFIED:20250319T135232Z
UID:2341-1742828400-1742832000@www.biomed.cas.cz
SUMMARY:Lectures – Laboratory of Experimental Hypertension\, IPHYS
DESCRIPTION:Silvie Hojná: Anorexigenic neuropeptides in the treatment of obesity \nObesity and its complications have reached epidemic proportions. Therefore\, finding new\, more effective drugs for the treatment of obesity without side effects is a major challenge. Natural anorexigenic neuropeptides have this potential\, but their major disadvantage is their low stability in plasma and inability to cross the blood-brain barrier (BBB) after peripheral administration. One strategy to develop peptidic drugs is based on peptide lipidization. This modification leads to increased stability and half-life of the peptide in the organism and allows its application in the periphery because lipidized peptides are able to cross the BBB. In Monday’s seminar\, you will hear the full story of the development of anorexigenic analogs of prolactin-releasing peptide (PrRP)\, including their implications not only for the treatment of obesity\, but also for their other potential applications. \nMahak Arora: Role of mTOR in cardiometabolic dysfunction \nCardiometabolic disorders (CMDs) such as hypertension\, diabetes and obesity are associated with damage to key organs such as the heart\, liver and kidneys. The mammalian target of rapamycin (mTOR) signaling pathway\, which is critical for cell metabolism and growth\, is often dysregulated in these diseases. In a mouse model of steatohepatitis\, the mTOR inhibitor KU-0063794 ameliorated oxidative stress\, reduced liver triglycerides and downregulated TNF-alpha mRNA by altering mTOR signaling. Recent pilot studies in high-fat fed SHR rats treated with empagliflozin and salt-sensitive Dahl rats exposed to high or low salt diet showed significant changes in mTOR-related genes such as mtor\, akt\, pgc1a\, srebp\, etc. in liver and kidney. These results suggest that mTOR plays a key role in the regulation of cardiometabolic functions
URL:https://www.biomed.cas.cz/event/lectures-laboratory-of-experimental-hypertension-iphys/
LOCATION:Kinosal\, Vídeňská 1083\, Praha
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Prague:20250326T160000
DTEND;TZID=Europe/Prague:20250326T170000
DTSTAMP:20260429T100226
CREATED:20250313T075437Z
LAST-MODIFIED:20250313T075437Z
UID:2330-1743004800-1743008400@www.biomed.cas.cz
SUMMARY:Seminář Jakub Gemperle\, Ph.D.
DESCRIPTION:“Live-cell magnetic micromanipulation of recycling endosomes reveals their direct effect on actin-based protrusions to promote invasive migration” \nEndocytic recycling pathways play key roles in the re-routing of cargoes through the cell to control a broad range of cellular processes\, and many vesicle trafficking regulators are implicated in progression of disease such as cancer. The Rab11 family (Rab11a\, Rab11b\, and Rab25) control return of internalised cargoes to the plasma membrane\, and Rab25 has been implicated in the aggressiveness of cancer by promoting invasive migration. However\, whilst Rab25 vesicles distribute to the leading of edge of moving cells\, how directly they contribute to cell protrusion is not clear. Here we adopt a magnetogenetic approach that allows direct manipulation of Rab25 positioning to show that localisation to the cell periphery drives the formation of F-actin protrusions. We demonstrate that endogenous Rab25 vesicles coordinate the positioning of key cargoes\, including the actin regulator FMNL1 and integrin β1\, with the activation of Rho GTPases at the plasma membrane to generate and maintain F-actin rich filopodial protrusions and promote cancer cell invasive migration in 3D matrix.
URL:https://www.biomed.cas.cz/event/seminar-jakub-gemperle-ph-d/
LOCATION:Posluchárna Milana Haška / Milan Hašek Auditorium
ORGANIZER;CN="%C3%9AMG":MAILTO:leona.krausova@img.cas.cz
END:VEVENT
BEGIN:VEVENT
DTSTART;VALUE=DATE:20250331
DTEND;VALUE=DATE:20250405
DTSTAMP:20260429T100226
CREATED:20250120T104415Z
LAST-MODIFIED:20250120T104415Z
UID:2289-1743379200-1743811199@www.biomed.cas.cz
SUMMARY:Course Processing and Analysis of Microscopic Images in Biomedicine
DESCRIPTION:Dear Colleagues\, \nthe Institute of Molecular Genetics of the Czech Academy of Sciences would like to invite you to the 5-day course „Processing and analysis of microscopic images in biomedicine (PAMIB25)“ intended for PhD students and junior researchers. \nThe course will address fundamental aspects of image data acquisition\, processing\, and analysis\, encompassing techniques in stereology. Alongside theoretical principles\, the course will prioritize hands-on practical learning. Participants will gain proficiency in utilizing the freely available software package Fiji for both basic and advanced analyses. They will learn to assess co-localizations\, analyze data from FRAP and electron microscopy\, track particles\, segment objects in images\, and explore methods of employing artificial intelligence for image segmentation. \nAdditionally\, participants will master techniques to enhance data quality through deconvolution using Huygens software. An interactive session featuring Imaris software will be complemented by practical exercises. Furthermore\, this year introduces a session utilizing NIS-Elements\, a platform for image processing developed in Prague\, and a lecture about the publishing images in scientific journals. Independent practical tasks involving Fiji and Huygens will also constitute a significant component of the course. \nThe course will be held at the Institute of Molecular Genetics of the Czech Academy of Sciences in Prague in March 31 – April 4\, 2025. For more information and link to the registration form\, please\, visit the course website: https://course.img.cas.cz/pamib/. The registration deadline is March 17. \nWhile the course aligns with the Microscopy Methods in Biomedicine\, prior attendance is not a prerequisite for participation. \nThe course will be taught in English. \nOn behalf of the organizers\, \nMichaela Blažíková and Martin Čapek
URL:https://www.biomed.cas.cz/event/course-processing-and-analysis-of-microscopic-images-in-biomedicine/
LOCATION:IMG
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Prague:20250331T150000
DTEND;TZID=Europe/Prague:20250331T160000
DTSTAMP:20260429T100226
CREATED:20250313T075257Z
LAST-MODIFIED:20250313T075257Z
UID:2328-1743433200-1743436800@www.biomed.cas.cz
SUMMARY:20. Metodický seminář BIOCEV-Krč
DESCRIPTION:„Etika a integrita vědeckého výzkumu a právní otázky“ \nSeminář se zaměří na témata: testy vědecké integrity; kdy zapojovat etické komise při řešení deliktů na pracovišti; význam závěrů etických komisí v právních přístupech; autorský zákon v praxi a z hlediska práva. \nJUDr. Ján Matejka\, Ph.D.\nředitel Ústavu státu a práva AV ČR\, v. v. i.
URL:https://www.biomed.cas.cz/event/20-metodicky-seminar-biocev-krc/
LOCATION:Posluchárna Milana Haška / Milan Hašek Auditorium
END:VEVENT
BEGIN:VEVENT
DTSTART;TZID=Europe/Prague:20250402T150000
DTEND;TZID=Europe/Prague:20250402T160000
DTSTAMP:20260429T100226
CREATED:20250325T073011Z
LAST-MODIFIED:20250325T122550Z
UID:2346-1743606000-1743609600@www.biomed.cas.cz
SUMMARY:Seminář Diego F. Joseph\, M.Sc.
DESCRIPTION:“Life Through Colors: Single-cell fluorescence-based reporter system for monitoring gene expression” \nThe presentation will depict a long journey from decision to actual making a novel reporter system for RNA silencing\, which could also be adopted for studying other mechanisms manipulating gene expression. This development lead to production of two types of triple-color reporter HeLa lines where fluorescence reporters are inserted in frame in into endogenous genes encoding highly abundant soluble nuclear proteins. The system now allows for monitoring repression (loss of specific dluorescence) and derepression (appearence of previously silenced fluorescence) across the entire population of cultured cells and\, possibly\, for high throughput screening.
URL:https://www.biomed.cas.cz/event/seminar-diego-andre-florian-joseph-m-sc/
LOCATION:Posluchárna Milana Haška / Milan Hašek Auditorium
ORGANIZER;CN="%C3%9AMG":MAILTO:leona.krausova@img.cas.cz
END:VEVENT
END:VCALENDAR